Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs238797 chr17:39373790 C/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238798 chr17:39373159 C/T 6.29E-7 134 13.17 35.37 42.27 KM Plot
TGCT rs238799 chr17:39373139 G/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238802 chr17:39368977 C/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238804 chr17:39367859 C/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238805 chr17:39366843 C/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238806 chr17:39365784 G/A 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs238808 chr17:39362988 C/T 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs238821 chr17:39355867 T/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238822 chr17:39355234 T/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238824 chr17:39346518 C/T 6.24E-7 134 42.18 46.03 13.17 KM Plot
TGCT rs238826 chr17:39342256 T/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238834 chr17:39351602 G/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs2478824 chr13:21844144 G/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs2484339 chr13:21844232 G/A 5.93E-7 132 46.3 36.7 14.42 KM Plot